Athletes
| # | Athlete | G · S · B | Total | ||
|---|---|---|---|---|---|
| 1 | Supriati Sutono Women · 1997–2005 | 24 Jun 1972 | 1500m, 5000m, 10,000m +1 | 10 gold 2 silver 3 bronze | 15 |
| 2 | Edwardus Nabunome Men · 1985–99 | 12 Apr 1968 | 5000m, 10,000m, Marathon | 6 gold 5 silver 0 bronze | 11 |
| 3 | Mardi Lestari Men · 1986–93 | 19 Jan 1968 | 100m, 200m, relays | 4 gold 3 silver 1 bronze | 8 |
| 4 | Frans Mahuse Men · 1981–91 | 18 Feb 1963 | Javelin throw | 4 gold 2 silver 1 bronze | 7 |
| 5 | Juliana Effendi Women · 1983–89 | 9 Jul 1965 | Discus throw | 3 gold 2 silver 0 bronze | 5 |
| 6 | Tati Ratnaningsih Women · 1987–95 | 8 Dec 1965 | Javelin throw | 3 gold 1 silver 1 bronze | 5 |
| 7 | Rumini Sudragni Women · 1993–97 | 23 Feb 1970 | 10,000m, Heptathlon | 3 gold 0 silver 1 bronze | 4 |
| 8 | Julius Uwe Men · 1985–93 | 28 Jan 1965 | Decathlon | 3 gold 0 silver 0 bronze | 3 |
| 9 | Mohammed Purnomo Men · 1983–89 | 23 Aug 1961 | 100m, 200m, relays | 2 gold 8 silver 3 bronze | 13 |
| 10 | Esther Sumah Suwadi Women · 1987–2001 | 10 Jun 1968 | 800m, 1500m, relays | 2 gold 4 silver 3 bronze | 9 |
| 11 | Timotius Sokai Ndiken Men · 1985–95 | 21 Jul 1965 | Javelin throw, Decathlon | 2 gold 3 silver 2 bronze | 7 |
| 12 | Hasiati Lawole Women · 1985–93 | 18 Dec 1966 | 5000m race walk, 10 km race walk, 10,000m race walk | 2 gold 3 silver 1 bronze | 6 |
| 13 | Parluatan Siregar Men · 1991–95 | 5 Feb 1966 | 1500m, 5000m, 3000m steeplechase | 2 gold 3 silver 0 bronze | 5 |
| 14 | Marija Suryati Women · 1989–93 | 1 Jan 1970 | 3000m, 10,000m, Marathon | 2 gold 2 silver 3 bronze | 7 |
| 15 | Hero Prayogo Men · 1983–89 | 22 Jul 1962 | 110m hurdles | 2 gold 2 silver 0 bronze | 4 |
| 16 | Freddy Mahuse Men · 1989–97 | 21 Jan 1966 | Javelin throw | 2 gold 2 silver 0 bronze | 4 |
| 17 | Iece Magdalena Siregar Women · 1983–87 | 22 Jun 1961 | 5000m race walk, 10,000m race walk | 2 gold 1 silver 2 bronze | 5 |
| 18 | Melly Mofu Men · 1977–81 | 27 Apr 1949 | 400m hurdles, relays | 2 gold 0 silver 3 bronze | 5 |
| 19 | Sidi Budi Dharma Men · 1979–87 | 14 Apr 1955 | Hammer throw | 2 gold 0 silver 3 bronze | 5 |
| 20 | Ali Sofyan Siregar Men · 1981–87 | 11 Nov 1958 | Marathon | 2 gold 0 silver 2 bronze | 4 |
| 21 | . Ruwiyati Women · 1994–97 | 1 Sep 1977 | 5000m, Marathon | 2 gold 0 silver 1 bronze | 3 |
| 22 | Christian Nenepath Men · 1985 | 21 Apr 1961 | 100m, relays | 2 gold 0 silver 0 bronze | 2 |
| 23 | Josephine Mahuse Women · 1985–87 | 10 Mar 1956 | Shot put | 2 gold 0 silver 0 bronze | 2 |
| 24 | Rachmad Sumarsono Men · 1987 | – | 10,000m race walk, 20 km race walk | 2 gold 0 silver 0 bronze | 2 |
| 25 | Irene Joseph Women · 1999–2009 | 14 Oct 1981 | 100m, 200m, relays | 1 gold 3 silver 5 bronze | 9 |
Only international medals count: national championship titles are left out.